Metal-oxide precipitation influences microbiome structure in hyporheic zones receiving acid rock drainage.

Streams impacted by historic mining activity are characterized by acidic pH, unique microbial communities, and abundant metal-oxide precipitation, all of which can influence groundwater-surface water exchange. We investigate how metal-oxide precipitates and hyporheic mixing mediate the composition of microbial communities in two streams receiving acid-rock and mine drainage near Silverton, Colorado, USA. A large, neutral pH hyporheic zone facilitated the precipitation of metal particles/colloids in hyporheic porewaters. A small, low pH hyporheic zone, limited by the presence of a low-permeability, iron-oxyhydroxide layer known as ferricrete, led to the formation of steep geochemical gradients and high dissolved-metal concentrations. To determine how these two hyporheic systems influence microbiome composition, we installed well clusters and deployed in situ microcosms in each stream to sample porewaters and sediments for 16S rRNA gene sequencing. Results indicated that distinct hydrogeochemical conditions were present above and below the ferricrete in the low pH system. A positive feedback loop may be present in the low pH stream where microbially mediated precipitation of iron-oxides contributes to additional clogging of hyporheic pore spaces, separating abundant, iron-oxidizing bacteria (Gallionella spp.) above the ferricrete from rare, low-abundance bacteria below the ferricrete. Metal precipitates and colloids that formed in the neutral pH hyporheic zone were associated with a more diverse phylogenetic community of nonmotile, nutrient-cycling bacteria that may be transported through hyporheic pore spaces. In summary, biogeochemical conditions influence, and are influenced by, hyporheic mixing, which mediates the distribution of micro-organisms and, thus, the cycling of metals in streams receiving acid-rock and mine drainage. IMPORTANCE: In streams receiving acid-rock and mine drainage, the abundant precipitation of iron minerals can alter how groundwater and surface water mix along streams (in what is known as the "hyporheic zone") and may shape the distribution of microbial communities. The findings presented here suggest that neutral pH streams with large, well-mixed hyporheic zones may harbor and transport diverse microorganisms attached to particles/colloids through hyporheic pore spaces. In acidic streams where metal oxides clog pore spaces and limit hyporheic exchange, iron-oxidizing bacteria may dominate and phylogenetic diversity becomes low. The abundance of iron-oxidizing bacteria in acid mine drainage streams has the potential to contribute to additional clogging of hyporheic pore spaces and the accumulation of toxic metals in the hyporheic zone. This research highlights the dynamic interplay between hydrology, geochemistry, and microbiology at the groundwater-surface water interface of acid mine drainage streams.

The Importance of Groundwater in Critical Zone Science.

The critical zone (CZ)-from treetops to groundwater-is an increasingly studied part of the earth system, where scientists study interactions between water, air, rock, soil, and life. Groundwater is both a boundary and an essential store in this integrated system, but is often not well considered in part because of the difficulty in accessing it and its slow movement relative to other parts of the system. Here, we describe some fundamental areas where groundwater hydrology is of fundamental importance to CZ science, including sustaining streamflow and vegetation, reacting with minerals to produce dissolved solutes and regolith, and influencing energy fluxes across the land-atmosphere interface. As the timing and type of precipitation change with climate, groundwater may play an even more important role in CZ processes as a sustainable water source for plants and streamflow. Many open questions also exist about the role of CZ processes on groundwater. Many data streams are needed and important to quantifying the integrated response of the CZ to groundwater and vice versa, but long-term data records are often incomplete or discontinued due to limited funding. We argue that the long timescales of processes that involve groundwater necessitate data collection efforts beyond typical federal funding timespans. Sustaining monitoring networks and developing new ones aimed at testing hypotheses related to slow-moving, groundwater-controlled CZ processes should be a scientific priority, and here we outline some open questions that we hope will motivate groundwater scientists to get involved in CZ science.

Reactive particle-tracking solutions to a benchmark problem on heavy metal cycling in lake sediments.

Geochemical systems are known to exhibit highly variable spatiotemporal behavior. This may be observed both in non-smooth concentration curves in space for a single sampling time and also in variability between samples taken from the same location at different times. However, most models that are designed to simulate these systems provide only single-solution smooth curves and fail to capture the noise and variability seen in the data. We apply a recently developed reactive particle-tracking method to a system that displays highly complex geochemical behavior. When the method is made to most closely resemble a corresponding Eulerian method, in its unperturbed form, we see near-exact match between solutions of the two models. More importantly, we consider two approaches for perturbing the model and find that the spatially-perturbed condition is able to capture a greater degree of the variability present in the data. This method of perturbation is a task to which particle methods are uniquely suited and Eulerian models are not well-suited. Additionally, because of the nature of the algorithm, noisy spatial gradients can be highly resolved by a large number of mobile particles, and this incurs negligible computational cost, as compared to expensive chemistry calculations.

Using geochemical indicators to distinguish high biogeochemical activity in floodplain soils and sediments.

A better understanding of how microbial communities interact with their surroundings in physically and chemically heterogeneous subsurface environments will lead to improved quantification of biogeochemical reactions and associated nutrient cycling. This study develops a methodology to predict potential elevated rates of biogeochemical activity (microbial "hotspots") in subsurface environments by correlating microbial DNA and aspects of the community structure with the spatial distribution of geochemical indicators in subsurface sediments. Multiple linear regression models of simulated precipitation leachate, HCl and hydroxylamine extractable iron and manganese, total organic carbon (TOC), and microbial community structure were used to identify sample characteristics indicative of biogeochemical hotspots within fluvially-derived aquifer sediments and overlying soils. The method has been applied to (a) alluvial materials collected at a former uranium mill site near Rifle, Colorado and (b) relatively undisturbed floodplain deposits (soils and sediments) collected along the East River near Crested Butte, Colorado. At Rifle, 16 alluvial samples were taken from 8 sediment cores, and at the East River, 46 soil/sediment samples were collected across and perpendicular to 3 active meanders and an oxbow meander. Regression models using TOC and TOC combined with extractable iron and manganese results were determined to be the best fitting statistical models of microbial DNA (via 16S rRNA gene analysis). Fitting these models to observations in both contaminated and natural floodplain deposits, and their associated alluvial aquifers, demonstrates the broad applicability of the geochemical indicator based approach.

Metal fate and partitioning in soils under bark beetle-killed trees.

Recent mountain pine beetle infestation in the Rocky Mountains of North America has killed an unprecedented acreage of pine forest, creating an opportunity to observe an active re-equilibration in response to widespread land cover perturbation. This work investigates metal mobility in beetle-impacted forests using parallel rainwater and acid leaches to estimate solid-liquid partitioning coefficients and a complete sequential extraction procedure to determine how metals are fractionated in soils under trees experiencing different phases of mortality. Geochemical model simulations analyzed in consideration with experimental data provide additional insight into the mechanisms controlling metal complexation. Metal and base-cation mobility consistently increased in soils under beetle-attacked trees relative to soil under healthy trees. Mobility increases were more pronounced on south facing slopes and more strongly correlated to pH under attacked trees than under healthy trees. Similarly, soil moisture was significantly higher under dead trees, related to the loss of transpiration and interception. Zinc and cadmium content increased in soils under dead trees relative to living trees. Cadmium increases occurred predominantly in the exchangeable fraction, indicating increased mobilization potential. Relative increases of zinc were greatest in the organic fraction, the only fraction where increases in copper were observed. Model results reveal that increased organic complexation, not changes in pH or base cation concentrations, can explain the observed differences in metal partitioning for zinc, nickel, cadmium, and copper. Predicted concentrations would be unlikely to impair human health or plant growth at these sites; however, higher exchangeable metals under beetle-killed trees relative to healthy trees suggest a possible decline in riverine ecosystem health and water quality in areas already approaching criteria limits and drinking water standards. Impairment of water quality in important headwater streams from the increased potential for metal mobilization and storage will continue to change as beetle-killed trees decompose and forests begin to recover.

The effects of physical and geochemical heterogeneities on hydro-geochemical transport and effective reaction rates.

The role of coupled physical and geochemical heterogeneities in hydro-geochemical transport is investigated by simulating three-dimensional transport in a heterogeneous system with kinetic mineral reactions. Ensembles of 100 physically heterogeneous realizations were simulated for three geochemical conditions: 1) spatially homogeneous reactive mineral surface area, 2) reactive surface area positively correlated to hydraulic heterogeneity, and 3) reactive surface area negatively correlated to hydraulic heterogeneity. Groundwater chemistry and the corresponding effective reaction rates were calculated at three transverse planes to quantify differences in plume evolution due to heterogeneity in mineral reaction rates and solute residence time (τ). The model is based on a hypothetical CO2 intrusion into groundwater from a carbon capture utilization and storage (CCUS) operation where CO2 dissolution and formation of carbonic acid created geochemical dis-equilibrium between fluids and the mineral galena that resulted in increased aqueous lead (Pb(2+)) concentrations. Calcite dissolution buffered the pH change and created conditions of galena oversaturation, which then reduced lead concentrations along the flow path. Near the leak kinetic geochemical reactions control the release of solutes into the fluid, but further along the flow path mineral solubility controls solute concentrations. Simulation results demonstrate the impact of heterogeneous distribution of geochemical reactive surface area in coordination with physical heterogeneity on the effective reaction rate (Krxn,eff) and Pb(2+) concentrations within the plume. Dissimilarities between ensemble Pb(2+) concentration and Krxn,eff are attributed to how geochemical heterogeneity affects the time (τeq) and therefore advection distance (Leq) required for the system to re-establish geochemical equilibrium. Only after geochemical equilibrium is re-established, Krxn,eff and Pb(2+) concentrations are the same for all three geochemical conditions. Correlation between reactive surface area and hydraulic conductivity, either positive or negative, results in variation in τeq and Leq.

Changes in metal mobility associated with bark beetle-induced tree mortality.

Recent large-scale beetle infestations have caused extensive mortality to conifer forests resulting in alterations to dissolved organic carbon (DOC) cycling, which in turn can impact metal mobility through complexation. This study analyzed soil-water samples beneath impacted trees in concert with laboratory flow-through soil column experiments to explore possible impacts of the bark beetle infestation on metal release and transport. The columns mimicked field conditions by introducing pine needle leachate and artificial rainwater through duplicate homogenized soil columns and measuring effluent metal (focusing on Al, Cu, and Zn) and DOC concentrations. All three metals were consistently found in higher concentrations in the effluent of columns receiving pine needle leachate. In both the field and laboratory, aluminum mobility was largely correlated with the hydrophobic fraction of the DOC, while copper had the largest correlation with total DOC concentrations. Geochemical speciation modeling supported the presence of DOC-metal complexes in column experiments. Copper soil water concentrations in field samples supported laboratory column results, as they were almost twice as high under grey phase trees than under red phase trees further signifying the importance of needle drop. Pine needle leachate contained high concentrations of Zn (0.1 mg l(-1)), which led to high effluent zinc concentrations and sorption of zinc to the soil matrix representing a future potential source for release. In support, field soil-water samples underneath beetle-impacted trees where the needles had recently fallen contained approximately 50% more zinc as samples from under beetle-impacted trees that still held their needles. The high concentrations of carbon in the pine needle leachate also led to increased sorption in the soil matrix creating the potential for subsequent carbon release. While unclear if manifested in adjacent surface waters, these results demonstrate an increased potential for Zn, Cu, and Al mobility, along with increased deposition of metals and carbon beneath beetle-impacted trees.

Metal release from sandstones under experimentally and numerically simulated CO2 leakage conditions.

Leakage of CO2 from a deep storage formation into an overlying potable aquifer may adversely impact water quality and human health. Understanding CO2-water-rock interactions is therefore an important step toward the safe implementation of geologic carbon sequestration. This study targeted the geochemical response of siliclastic rock, specifically three sandstones of the Mesaverde Group in northwestern Colorado. To test the hypothesis that carbonate minerals, even when present in very low levels, would be the primary source of metals released into a CO2-impacted aquifer, two batch experiments were conducted. Samples were reacted for 27 days with water and CO2 at partial pressures of 0.01 and 1 bar, representing natural background levels and levels expected in an aquifer impacted by a small leakage, respectively. Concentrations of major (e.g., Ca, Mg) and trace (e.g., As, Ba, Cd, Fe, Mn, Pb, Sr, U) elements increased rapidly after CO2 was introduced into the system, but did not exceed primary Maximum Contaminant Levels set by the U.S. Environmental Protection Agency. Results of sequential extraction suggest that carbonate minerals, although volumetrically insignificant in the sandstone samples, are the dominant source of mobile metals. This interpretation is supported by a simple geochemical model, which could simulate observed changes in fluid composition through CO2-induced calcite and dolomite dissolution.

Human health risk assessment of CO2 leakage into overlying aquifers using a stochastic, geochemical reactive transport approach.

Increased human health risk associated with groundwater contamination from potential carbon dioxide (CO2) leakage into a potable aquifer is predicted by conducting a joint uncertainty and variability (JUV) risk assessment. The approach presented here explicitly incorporates heterogeneous flow and geochemical reactive transport in an efficient manner and is used to evaluate how differences in representation of subsurface physical heterogeneity and geochemical reactions change the calculated risk for the same hypothetical aquifer scenario where a CO2 leak induces increased lead (Pb(2+)) concentrations through dissolution of galena (PbS). A nested Monte Carlo approach was used to take Pb(2+) concentrations at a well from an ensemble of numerical reactive transport simulations (uncertainty) and sample within a population of potentially exposed individuals (variability) to calculate risk as a function of both uncertainty and variability. Pb(2+) concentrations at the well were determined with numerical reactive transport simulation ensembles using a streamline technique in a heterogeneous 3D aquifer. Three ensembles with variances of log hydraulic conductivity (σ(2)lnK) of 1, 3.61, and 16 were simulated. Under the conditions simulated, calculated risk is shown to be a function of the strength of subsurface heterogeneity, σ(2)lnK and the choice between calculating Pb(2+) concentrations in groundwater using equilibrium with galena and kinetic mineral reaction rates. Calculated risk increased with an increase in σ(2)lnK of 1 to 3.61, but decreased when σ(2)lnK was increased from 3.61 to 16 for all but the highest percentiles of uncertainty. Using a Pb(2+) concentration in equilibrium with galena under CO2 leakage conditions (PCO2 = 30 bar) resulted in lower estimated risk than the simulations where Pb(2+) concentrations were calculated using kinetic mass transfer reaction rates for galena dissolution and precipitation. This study highlights the importance of understanding both hydrologic and geochemical conditions when numerical simulations are used to perform quantitative risk calculations.

Geochemical implications of brine leakage into freshwater aquifers.

CO(2) injection into deep saline formations as a way to mitigate climate change raises concerns that leakage of saline waters from the injection formations will impact water quality of overlying aquifers, especially underground sources of drinking water (USDWs). This paper aims to characterize the geochemical composition of deep brines, with a focus on constituents that pose a human health risk and are regulated by the U.S. Environmental Protection Agency (USEPA). A statistical analysis of the NATCARB brine database, combined with simple mixing model calculations, show total dissolved solids and concentrations of chloride, boron, arsenic, sulfate, nitrate, iron and manganese may exceed plant tolerance or regulatory levels. Twelve agricultural crops evaluated for decreased productivity in the event of brine leakage would experience some yield reduction due to increased TDS at brine-USDW ratios of < 0.1, and a 50% yield reduction at < 0.2 brine-USDW ratio. A brine-USDW ratio as low as 0.004 may result in yield reduction in the most sensitive crops. The USEPA TDS secondary standard is exceeded at a brine fraction of approximately 0.002. To our knowledge, this is the first study to consider agricultural impacts of brine leakage, even though agricultural withdrawals of groundwater in the United States are almost three times higher than public and domestic withdrawals.

Kinetic metal release from competing processes in aquifers.

Understanding groundwater time scales wherein kinetic metal-desorption and mineral-dissolution are important mechanisms is essential for realistic modeling of metal release. In this study, release rate constants were compiled and the Damköhler number was applied to calculate residence times where kinetic formulations are relevant. Desorption rate constants were compiled for arsenic, barium, cadmium, copper, lead, mercury, nickel, and zinc, and span 6 orders of magnitude, while mineral-dissolution rate constants compiled for calcite, kaolinite, smectite, anorthite, albite, K-feldspar, muscovite, quartz, goethite, and galena ranged over 13 orders of magnitude. This Damköhler analysis demonstrated that metal-desorption kinetics are potentially influential at residence times up to about two years, depending on the metal and groundwater conditions. Kinetic mineral-dissolution should be considered for nearly all residence times relevant to groundwater modeling, provided the rate, solubility, and availability of the mineral generates a non-negligible concentration. Geochemical models of competitive desorption and dissolution for an illustrative metal demonstrate total metal concentrations may be sensitive to dissolution rate variations despite the predominance of release from desorption. Ultimately, this analysis provides constraints on relevant processes for incorporation into transport models.